5YCK
Crystal structure of a MATE family protein derived from Camelina sativa at 2.3 angstrom
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-06-22 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.650, 69.240, 116.950 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.623 - 2.300 |
R-factor | 0.2256 |
Rwork | 0.223 |
R-free | 0.25360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xjj |
RMSD bond length | 0.002 |
RMSD bond angle | 0.444 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.5.3) |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.623 | 45.623 | 2.440 |
High resolution limit [Å] | 2.300 | 6.890 | 2.300 |
Rmerge | 0.403 | 0.117 | 2.451 |
Rmeas | 0.418 | 0.122 | 2.545 |
Total number of observations | 274945 | ||
Number of reflections | 21982 | 901 | 3514 |
<I/σ(I)> | 6.48 | 20.79 | 1.42 |
Completeness [%] | 97.2 | 94.4 | 97.5 |
Redundancy | 12.508 | 12.433 | 12.725 |
CC(1/2) | 0.987 | 0.996 | 0.554 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 7.1 | 298 | 33% PEG300, 200mM (NH4)2SO4, 100mM Tris, 100mM RbCl |