5YAP
Crystal structure of scyllo-inositol dehydrogenase with L-glucose dehydrogenase activity complexed with L-glucono-1,5-lactone
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2010-11-06 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 86.571, 121.177, 140.865 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.500 - 1.800 |
R-factor | 0.16295 |
Rwork | 0.163 |
R-free | 0.17045 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yab |
RMSD bond length | 0.010 |
RMSD bond angle | 1.486 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0107) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.830 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.082 | 0.619 |
Number of reflections | 137356 | |
<I/σ(I)> | 18.1 | 2.3 |
Completeness [%] | 99.6 | 99 |
Redundancy | 3.6 | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M sodium acetate pH 4.8 - 5.4, 12 - 35% PEG3350 |