5Y6G
PilZ domain with c-di-GMP of YcgR from Escherichia coli
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-04-07 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9793 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 110.340, 110.340, 35.570 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.779 - 2.300 |
R-factor | 0.2048 |
Rwork | 0.204 |
R-free | 0.22830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5y6f |
RMSD bond length | 0.002 |
RMSD bond angle | 0.558 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.780 | 2.420 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.094 | 0.612 |
Rpim | 0.031 | 0.203 |
Number of reflections | 11266 | 1624 |
<I/σ(I)> | 16 | 4.1 |
Completeness [%] | 99.9 | 100 |
Redundancy | 10.1 | 9.9 |
CC(1/2) | 0.998 | 0.875 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | 0.2 M ammonium sulfate, 0.1 M Bis-Tris pH 5.5, 23% PEG 3350 |