5Y5O
Crystal structure of the dUTPase of white spot syndrome virus in the apo state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-01-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 94.230, 97.290, 107.470 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.610 - 2.400 |
R-factor | 0.217 |
Rwork | 0.215 |
R-free | 0.25900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3c3i |
RMSD bond length | 0.010 |
RMSD bond angle | 1.170 |
Data reduction software | XDS (VERSION May 1, 2016) |
Data scaling software | XDS (VERSION May 1, 2016) |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.037 | 2.459 |
High resolution limit [Å] | 2.403 | 2.403 |
Rmerge | 0.064 | 0.307 |
Rpim | 0.151 | |
Number of reflections | 36602 | 2021 |
<I/σ(I)> | 18.6 | 5.3 |
Completeness [%] | 93.4 | 78.2 |
Redundancy | 6.7 | 4.9 |
CC(1/2) | 0.975 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 30% (w/v) PEG 1500 |