5Y50
Crystal structure of eukaryotic MATE transporter AtDTX14
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-09 |
Detector | RAYONIX MX225-HS |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.800, 86.780, 116.430 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.345 - 2.600 |
R-factor | 0.2266 |
Rwork | 0.224 |
R-free | 0.27590 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3mkt |
RMSD bond length | 0.008 |
RMSD bond angle | 0.943 |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.345 | 48.345 | 2.760 |
High resolution limit [Å] | 2.600 | 7.780 | 2.600 |
Rmerge | 0.576 | 0.130 | 6.712 |
Rmeas | 0.587 | 0.133 | 6.833 |
Number of reflections | 16880 | 728 | 2767 |
<I/σ(I)> | 7.79 | 28.45 | 0.9 |
Completeness [%] | 98.5 | 99.2 | 100 |
Redundancy | 28.488 | 25.054 | 28.482 |
CC(1/2) | 0.994 | 0.997 | 0.609 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 5 | 293 | Na-citrate, MgSO4, NaK-tartrate-tetrahydrate, PEG550MME |