Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5Y28

Crystal structure of H. pylori HtrA with PDZ2 deletion

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U1
Synchrotron siteSSRF
BeamlineBL17U1
Temperature [K]100
Detector technologyCCD
Collection date2017-05-05
DetectorADSC QUANTUM 315r
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths89.910, 91.500, 120.320
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.876 - 3.086
R-factor0.259468200327
Rwork0.257
R-free0.29838
RMSD bond length0.002
RMSD bond angle0.538
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0003.000
High resolution limit [Å]2.9006.2402.900
Rmerge0.0890.0451.345
Rmeas0.1040.0531.570
Rpim0.0540.0280.807
Total number of observations151679
Number of reflections18846
<I/σ(I)>7.2
Completeness [%]97.698.194
Redundancy3.63.73.6
CC(1/2)0.9950.550
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52930.1 M HEPES pH 7.5, 0.2 M proline, 18%-20% PEG 1500

239149

PDB entries from 2025-07-23

PDB statisticsPDBj update infoContact PDBjnumon