5Y23
X-ray crystal structure of Pseudoazurin Met16Phe variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-06-28 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 34.715, 59.620, 54.324 |
Unit cell angles | 90.00, 105.37, 90.00 |
Refinement procedure
Resolution | 26.200 - 1.400 |
R-factor | 0.143 |
Rwork | 0.141 |
R-free | 0.18160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bqk |
RMSD bond length | 0.027 |
RMSD bond angle | 2.643 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.450 |
High resolution limit [Å] | 1.400 | 3.020 | 1.400 |
Rmerge | 0.058 | 0.047 | 0.231 |
Total number of observations | 154641 | ||
Number of reflections | 40971 | ||
<I/σ(I)> | 9.8 | ||
Completeness [%] | 97.4 | 94.5 | 96 |
Redundancy | 3.8 | 3.6 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | Drop: 100 mM Tris-HCl buffer, 15.5 % PEG4000, 31 mg/mL Protein Reservoir: 100 mM Tris-HCl buffer, 31 % PEG4000 |