5Y1Y
Complex structure of nitroxoline with the first bromodomain of BRD4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-05 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9785 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 32.892, 47.298, 78.500 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.510 - 1.912 |
R-factor | 0.1837 |
Rwork | 0.179 |
R-free | 0.22380 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.801 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 40.510 |
High resolution limit [Å] | 1.912 |
Number of reflections | 9973 |
<I/σ(I)> | 36.87 |
Completeness [%] | 100.0 |
Redundancy | 12.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 10-15% glycerol, 4M sodium formate |