5XX0
Crystal structure of the four N-terminal immunoglogulin domains of Sidekick-2 protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2013-10-11 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 82.356, 86.801, 108.553 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.801 - 2.400 |
R-factor | 0.2314 |
Rwork | 0.228 |
R-free | 0.28400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xwx |
RMSD bond length | 0.004 |
RMSD bond angle | 0.845 |
Data reduction software | DENZO |
Data scaling software | HKL-2000 |
Phasing software | SHELXD |
Refinement software | PHENIX (1.9_1690) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.065 | 0.440 |
Number of reflections | 30490 | 2890 |
<I/σ(I)> | 22.21 | 2.67 |
Completeness [%] | 97.8 | 93.56 |
Redundancy | 4.7 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2M MgCl2, 0.1M Bis-Tris, pH5.5, 25% PEG 3350 |