5XT8
Magnesium bound apo structure of thymidylate kinase (form I) from Thermus thermophilus HB8
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU ULTRAX 18 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2012-07-10 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.541 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.620, 80.720, 122.790 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.870 - 2.010 |
R-factor | 0.1773 |
Rwork | 0.175 |
R-free | 0.22240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5x7j |
RMSD bond length | 0.018 |
RMSD bond angle | 1.833 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.870 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.103 | |
Number of reflections | 26844 | |
<I/σ(I)> | 14 | |
Completeness [%] | 97.2 | |
Redundancy | 10 | |
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 295 | 0.2M MgCl2.6H2O, 0.1M Tris hydrochloride, 30% PEG 4000 |