5XPZ
Structural basis of kindlin-mediated integrin recognition and activation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-10-20 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.98 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 75.427, 75.427, 383.871 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.652 - 2.601 |
R-factor | 0.2427 |
Rwork | 0.241 |
R-free | 0.28330 |
Structure solution method | MAD |
RMSD bond length | 0.002 |
RMSD bond angle | 0.559 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 7.050 | 2.600 |
Rmerge | 0.077 | 0.046 | 0.854 |
Rmeas | 0.084 | 0.050 | 0.920 |
Rpim | 0.033 | 0.020 | 0.333 |
Number of reflections | 37581 | ||
<I/σ(I)> | 12.7 | ||
Completeness [%] | 93.0 | 93.3 | 94.2 |
Redundancy | 6.2 | 5.8 | 6.8 |
CC(1/2) | 0.997 | 0.639 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289 | 0.2 M potassium chloride, 0.05 M HEPES pH 7.5, 35% v/v pentaerythritol propoxylate |