5XOG
RNA Polymerase II elongation complex bound with Spt5 KOW5 and Elf1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-10-08 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 155.250, 159.910, 268.930 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.552 - 3.000 |
R-factor | 0.1956 |
Rwork | 0.195 |
R-free | 0.22530 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.889 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.552 | 49.552 | 3.080 |
High resolution limit [Å] | 3.000 | 13.420 | 3.000 |
Rmerge | 0.110 | 0.026 | 1.289 |
Rmeas | 0.119 | 0.028 | 1.405 |
Number of reflections | 134084 | 1624 | 9841 |
<I/σ(I)> | 15.48 | 50.89 | 1.52 |
Completeness [%] | 99.9 | 97.2 | 99.9 |
Redundancy | 6.733 | 5.982 | 6.4 |
CC(1/2) | 0.998 | 0.999 | 0.515 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | 50 mM potassium malonate (pH 6.0), 150 mM Tris malonate (malonic acid titrated with Tris(hydroxymethyl) aminomethane, pH 6.0), 6.67% (v/v) glycerol, 6.67% (w/v) trehalose dihydrate and 10% PEG20000 |