Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5XOG

RNA Polymerase II elongation complex bound with Spt5 KOW5 and Elf1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL41XU
Synchrotron siteSPring-8
BeamlineBL41XU
Temperature [K]100
Detector technologyPIXEL
Collection date2015-10-08
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths155.250, 159.910, 268.930
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.552 - 3.000
R-factor0.1956
Rwork0.195
R-free0.22530
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle0.889
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.55249.5523.080
High resolution limit [Å]3.00013.4203.000
Rmerge0.1100.0261.289
Rmeas0.1190.0281.405
Number of reflections13408416249841
<I/σ(I)>15.4850.891.52
Completeness [%]99.997.299.9
Redundancy6.7335.9826.4
CC(1/2)0.9980.9990.515
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP629350 mM potassium malonate (pH 6.0), 150 mM Tris malonate (malonic acid titrated with Tris(hydroxymethyl) aminomethane, pH 6.0), 6.67% (v/v) glycerol, 6.67% (w/v) trehalose dihydrate and 10% PEG20000

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon