5XHU
Crystal structure of ycgT from bacillus subtilis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL38B1 |
Synchrotron site | SPring-8 |
Beamline | BL38B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-05-29 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 1.0000 |
Spacegroup name | C 2 2 2 |
Unit cell lengths | 72.371, 164.598, 76.576 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.720 - 2.100 |
R-factor | 0.203 |
Rwork | 0.201 |
R-free | 0.23410 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.415 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.085 | 0.021 | 0.830 |
Rmeas | 0.092 | 0.023 | 0.893 |
Rpim | 0.034 | 0.009 | 0.328 |
Number of reflections | 27133 | ||
<I/σ(I)> | 8.9 | ||
Completeness [%] | 100.0 | 99.6 | 99.9 |
Redundancy | 7.2 | 6.4 | 7.3 |
CC(1/2) | 0.999 | 0.892 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1M Tris buffer pH 8.6, 0.2 M tri-Sodium citrate, and 40% PEG400 |