5XFM
Crystal structure of beta-arabinopyranosidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | AREA DETECTOR |
Collection date | 2015-07-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | P 1 |
Unit cell lengths | 72.810, 90.510, 128.550 |
Unit cell angles | 105.50, 94.80, 96.15 |
Refinement procedure
Resolution | 45.780 - 2.300 |
R-factor | 0.2089 |
Rwork | 0.207 |
R-free | 0.25260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3a24 |
RMSD bond length | 0.005 |
RMSD bond angle | 1.027 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.360 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.150 | 0.471 |
Number of reflections | 125374 | 8292 |
<I/σ(I)> | 6.6 | 2.7 |
Completeness [%] | 90.0 | 80.4 |
Redundancy | 3.2 | 3.2 |
CC(1/2) | 0.985 | 0.880 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | 45 % (v/v) MPD, 0.2 M Lithium sulfate, 0.1 M MES-NaOH (pH 6.0) |