Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5XEW

Crystal structure of the [Ni2+-(chromomycin A3)2]-CCG repeats complex

Replaces:  5ERZ
Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsNSRRC BEAMLINE BL13B1
Synchrotron siteNSRRC
BeamlineBL13B1
Temperature [K]100
Detector technologyCCD
Collection date2013-01-01
DetectorADSC QUANTUM 315r
Wavelength(s)1.45104,1.48491,1.48582
Spacegroup nameP 32 1 2
Unit cell lengths48.291, 48.291, 83.356
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution23.192 - 1.751
R-factor0.2103
Rwork0.207
R-free0.23790
Structure solution methodMAD
RMSD bond length0.007
RMSD bond angle1.088
Data scaling softwareHKL-2000
Phasing softwareSHELX
Refinement softwarePHENIX (1.10.1-2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]30.00030.0001.810
High resolution limit [Å]1.7503.7701.750
Rmerge0.0500.0410.364
Number of reflections21692
<I/σ(I)>28.2
Completeness [%]99.699.296.5
Redundancy10.110.46.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP62771.0 mM single stranded-DNA, 2.0 mM Chromomycin A3, 4mM NiSO4 6H2O, 50 mM sodium-cacodylate buffer, 5 mM MgCl2, 1 mM spermine, 3 % MPD

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon