5XCC
X-ray structure of Clostridium perfringens pili protein CppA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-02-27 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 63.340, 71.330, 228.760 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 114.380 - 2.480 |
R-factor | 0.22974 |
Rwork | 0.228 |
R-free | 0.27182 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xcb |
RMSD bond length | 0.005 |
RMSD bond angle | 0.757 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 114.380 | 2.540 |
High resolution limit [Å] | 2.480 | 2.480 |
Rmerge | 0.068 | 0.490 |
Number of reflections | 37465 | |
<I/σ(I)> | 16.08 | 3.71 |
Completeness [%] | 99.4 | 98.6 |
Redundancy | 5.28 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1M Sodium formate, 0.1M Ammonium acetate, 0.1M Sodium citrate tribasic dihydrate, 0.1M Sodium potassium tartrate tetrahydrate, 0.1M Sodium oxamate, 0.1M Imidazole, o.1M MES monohydrate (acid), 20% v/v Ethylene glycol, 10% w/v PEG 8000 |