5WNZ
DNA polymerase beta substrate complex with incoming 5-FodCTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-22 |
Detector | DECTRIS PILATUS3 R 200K-A |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.607, 79.627, 55.624 |
Unit cell angles | 90.00, 107.24, 90.00 |
Refinement procedure
Resolution | 24.962 - 2.200 |
R-factor | 0.1987 |
Rwork | 0.193 |
R-free | 0.25410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fms |
RMSD bond length | 0.008 |
RMSD bond angle | 0.900 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 2.240 |
High resolution limit [Å] | 2.200 | 5.950 | 2.200 |
Rmerge | 0.097 | 0.100 | 0.430 |
Rmeas | 0.113 | 0.116 | 0.562 |
Rpim | 0.056 | 0.058 | 0.358 |
Number of reflections | 34486 | 1084 | 975 |
<I/σ(I)> | 10 | ||
Completeness [%] | 98.0 | 97.1 | 94.5 |
Redundancy | 3.4 | 3.8 | 2 |
CC(1/2) | 0.979 | 0.735 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 50 mM imidazole, pH 7.5, 16% PEG3350, and 350 mM sodium acetate. |