Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5WKT

3.2-Angstrom In situ Mylar structure of bovine opsin at 100 K

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2017-03-21
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.0
Spacegroup nameH 3 2
Unit cell lengths242.043, 242.043, 110.637
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution45.740 - 3.200
R-factor0.2746
Rwork0.274
R-free0.29460
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4j4q
RMSD bond length0.007
RMSD bond angle0.875
Data reduction softwareiMOSFLM
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.12_2829))
Data quality characteristics
 Overall
Low resolution limit [Å]45.740
High resolution limit [Å]3.200
Rmerge0.075
Number of reflections20539
<I/σ(I)>9.23
Completeness [%]100.0
Redundancy2
CC(1/2)0.970
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION5.5280100 mM sodium acetate , 3.8 M (NH4)2SO4, ~12% (w/v) trehalose

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon