5WKQ
2.10 A resolution structure of IpaB (residues 74-242) from Shigella flexneri
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | I 4 |
Unit cell lengths | 171.429, 171.429, 40.591 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.873 - 2.100 |
R-factor | 0.2027 |
Rwork | 0.201 |
R-free | 0.24450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3u0c |
Data reduction software | Aimless |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHENIX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.860 | 42.860 | 2.160 |
High resolution limit [Å] | 2.100 | 8.910 | 2.100 |
Rmerge | 0.091 | 0.060 | 0.981 |
Total number of observations | 233850 | 3156 | 18814 |
Number of reflections | 34988 | 504 | 2862 |
<I/σ(I)> | 11.1 | 28.1 | 2 |
Completeness [%] | 99.8 | 96.4 | 100 |
Redundancy | 6.7 | 6.3 | 6.6 |
CC(1/2) | 0.997 | 0.997 | 0.802 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4 | 293 | 0.2 M ammonium acetate, 0.1 M sodium acetate (pH 4.0) and 15% (w/v) PEG 4000 |