5WEW
Crystal structure of Klebsiella pneumoniae fosfomycin resistance protein (FosAKP) with inhibitor (ANY1) bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-01-13 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 120.399, 197.615, 117.027 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.748 - 3.178 |
R-factor | 0.2229 |
Rwork | 0.221 |
R-free | 0.26210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5v3d |
RMSD bond length | 0.002 |
RMSD bond angle | 0.492 |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER (1.10.1_2155) |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.010 | 39.010 | 3.400 |
High resolution limit [Å] | 3.178 | 8.990 | 3.180 |
Rmerge | 0.326 | 0.067 | 0.968 |
Rmeas | 0.371 | 0.076 | 1.102 |
Rpim | 0.171 | 0.035 | 0.506 |
Number of reflections | 21310 | ||
<I/σ(I)> | 4.3 | ||
Completeness [%] | 90.0 | 87.9 | 91.6 |
Redundancy | 3.8 | 4 | 3.8 |
CC(1/2) | 0.955 | 0.997 | 0.577 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 298 | Protein stock: 12mg/ml FosAKP 6mM MnCl2 2.5mM ANY1 100mM KCl Centrifuge 19,150 x g for 10 min then take 1uL supernatant and combine with 1uL mother liquor (0.02M CaCl2, 0.1M sodium acetate pH 4.6, 30% MPD) in hanging drops. |