5WBZ
Structure of human Ketohexokinase complexed with hits from fragment screening
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-10-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 83.180, 86.380, 137.620 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 73.160 - 2.400 |
R-factor | 0.1899 |
Rwork | 0.189 |
R-free | 0.21360 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 3nbv |
RMSD bond length | 0.010 |
RMSD bond angle | 1.150 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.16) |
Phasing software | BUSTER |
Refinement software | BUSTER (2.11.5) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 137.616 | 137.616 | 2.530 |
High resolution limit [Å] | 2.400 | 7.580 | 2.400 |
Rmerge | 0.040 | 0.375 | |
Rmeas | 0.086 | 0.046 | 0.468 |
Rpim | 0.034 | 0.018 | 0.220 |
Total number of observations | 236415 | 7891 | 23222 |
Number of reflections | 39513 | ||
<I/σ(I)> | 14.3 | 28.6 | 2.7 |
Completeness [%] | 99.6 | 99.5 | 97.7 |
Redundancy | 6 | 5.7 | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 17% PEG 8k, 0.1M Na-Citrate, 0.2M Ammonium sulfate, pH 4.5 |