5WB7
Crystal structure of the epidermal growth factor receptor extracellular region in complex with epiregulin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-06-17 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.03 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 76.647, 199.288, 87.916 |
Unit cell angles | 90.00, 96.74, 90.00 |
Refinement procedure
Resolution | 47.684 - 2.941 |
R-factor | 0.2267 |
Rwork | 0.225 |
R-free | 0.26750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | EGFR domains I and III from PDB entry 3NJP |
RMSD bond length | 0.004 |
RMSD bond angle | 0.902 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.990 |
High resolution limit [Å] | 2.940 | 7.970 | 2.940 |
Rmerge | 0.131 | 0.090 | 0.458 |
Rmeas | 0.160 | 0.111 | 0.570 |
Rpim | 0.090 | 0.063 | 0.334 |
Number of reflections | 53585 | ||
<I/σ(I)> | 5.3 | 1.7 | |
Completeness [%] | 97.2 | 98.3 | 89.8 |
Redundancy | 2.8 | 2.9 | 2.3 |
CC(1/2) | 0.975 | 0.749 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.6 | 294 | 0.03 M citric acid, 0.07 M Bis-Tris propane, 16% PEG3350 |