5W3D
The structure of kinesin-14 wild-type Ncd-ADP dimer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL13B1 |
Synchrotron site | NSRRC |
Beamline | BL13B1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-22 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 163.271, 67.249, 94.421 |
Unit cell angles | 90.00, 97.92, 90.00 |
Refinement procedure
Resolution | 46.800 - 2.790 |
R-factor | 0.2376 |
Rwork | 0.235 |
R-free | 0.28020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1n6m |
RMSD bond length | 0.008 |
RMSD bond angle | 1.290 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 93.521 | 46.761 | 2.940 |
High resolution limit [Å] | 2.789 | 8.820 | 2.790 |
Rmerge | 0.045 | 0.533 | |
Rmeas | 0.100 | 0.050 | 0.586 |
Rpim | 0.041 | 0.020 | 0.240 |
Total number of observations | 146928 | 4428 | 20165 |
Number of reflections | 25309 | ||
<I/σ(I)> | 11.5 | 28.6 | 2.7 |
Completeness [%] | 99.1 | 99 | 94.7 |
Redundancy | 5.8 | 5.2 | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.8 | 291 | 50 mM sodium phosphate, 7 mM dithiothreitol, 10 mM magnesium chloride, 700 mM sodium chloride, 13% PEG8000 (w/v) |