5W2B
Crystal structure of C-terminal domain of Ebola (Reston) nucleoprotein in complex with Fab fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-11-14 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 47.508, 88.516, 137.166 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.623 - 2.250 |
R-factor | 0.2007 |
Rwork | 0.198 |
R-free | 0.25380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vkd |
RMSD bond length | 0.007 |
RMSD bond angle | 1.014 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX (1.9_1692) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.300 |
High resolution limit [Å] | 2.250 | 2.250 |
Rpim | 0.034 | 0.249 |
Number of reflections | 28393 | 1835 |
<I/σ(I)> | 3.21 | |
Completeness [%] | 99.8 | |
Redundancy | 7.3 | 5 |
CC(1/2) | 0.836 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 288 | 20 mM xylitol, 20 mM myo-Inositol, 20 mM D-Fructose, 20 mM L-Rhamnose monohydrate, 20 mM D-Sorbitol, 0.1 M BES pH 7.5, 0.1 M triethanolamine (TEA) pH 7.5, 10% w/v PEG 8000, 20% w/v 1,5-Pentanediol |