5VX9
VP8* of P[6] Human Rotavirus RV3 in complex with LNFP1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-12-12 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 36.510, 42.630, 95.070 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.740 - 1.822 |
R-factor | 0.1459 |
Rwork | 0.143 |
R-free | 0.19940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2aen |
RMSD bond length | 0.007 |
RMSD bond angle | 1.094 |
Data reduction software | iMOSFLM (7.0.9) |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER (2.5.5) |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 31.740 | |
High resolution limit [Å] | 1.822 | 1.822 |
Rmerge | 0.091 | 0.183 |
Rpim | 0.046 | 0.091 |
Number of reflections | 13693 | |
<I/σ(I)> | 11.62 | |
Completeness [%] | 98.8 | |
Redundancy | 1.9 | |
CC(1/2) | 0.993 | 0.962 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 2.0 M ammonium sulfate, 0.1 M Tris, pH 8.5 |