5VUB
Pim1 Kinase in complex with a benzofuranone inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B2 |
Synchrotron site | SPring-8 |
Beamline | BL26B2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-01-24 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 1.0 |
Spacegroup name | P 65 |
Unit cell lengths | 98.100, 98.100, 80.610 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 31.140 - 2.000 |
R-factor | 0.1614 |
Rwork | 0.160 |
R-free | 0.18370 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.932 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.2.25) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 31.144 | 32.111 | 2.110 |
High resolution limit [Å] | 2.000 | 6.320 | 2.000 |
Rmerge | 0.068 | 0.023 | 0.439 |
Rmeas | 0.074 | 0.025 | 0.477 |
Rpim | 0.029 | 0.010 | 0.188 |
Number of reflections | 29862 | ||
<I/σ(I)> | 18.4 | 24.4 | 1.7 |
Completeness [%] | 99.9 | 98.7 | 100 |
Redundancy | 6.4 | 6.2 | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | 100MM CITRATE BUFFER, PH 5.5, 200MM NACL, 1M NH4HPO4 |