5VSM

Crystal structure of viperin with bound [4Fe-4S] cluster, 5'-deoxyadenosine, and L-methionine

Experimental procedure

実験手法	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	APS BEAMLINE 24-ID-C
Synchrotron site	APS
Beamline	24-ID-C
Temperature [K]	100
Detector technology	PIXEL
Collection date	2016-08-18
Detector	DECTRIS PILATUS 6M-F
Wavelength(s)	0.9792
Spacegroup name	P 21 21 21
格子定数 [Å]	59.364, 73.264, 141.939
格子定数 [度]	90.00, 90.00, 90.00

精密化法

残基	45.534 - 1.700
R因子	0.1603
Rwork	0.159
R-free	0.19460
Structure solution method	FOURIER SYNTHESIS
Starting model (for MR)	Viperin with bound [4Fe-4S] cluster and S-adenosylhomocysteine
結合長の平均二乗偏差(RMSD) [Å]	0.013
結合角の平均二乗偏差(RMSD) [度]	1.860
Data scaling software	HKL-2000
Phasing software	PHENIX ((1.11.1_2575: 000))
Refinement software	PHENIX ((1.11.1_2575: 000))

Quality characteristics

	Overall	Outer shell
分解能 [Å] (低)	50.000	1.760
分解能 [Å] (高)	1.700	1.700
Rmerge_l_obs	0.050	0.566
独立反射数	68453	6690
<I/σ(I)>	13.3	1.9
完全性 [%]	99.1	98.7
冗長性	3.9	3.7

結晶化条件

結晶ID	方法	pH	温度	溶液条件
1	VAPOR DIFFUSION, HANGING DROP		295	100 mM HEPES, pH 6.8 - 7.6, 10-30% PEG MME 2000, 5 mM 5'-deoxyadenosine, and 10 mM L-methionine