5VS2
Human DNA polymerase beta pre-catalytic 8-oxoG:dA extension complex with dTTP bound in Watson-Crick conformation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-04-01 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.97931 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.940, 80.490, 55.660 |
Unit cell angles | 90.00, 107.28, 90.00 |
Refinement procedure
Resolution | 48.640 - 2.330 |
R-factor | 0.1904 |
Rwork | 0.187 |
R-free | 0.24980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rpx |
RMSD bond length | 0.012 |
RMSD bond angle | 1.614 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 53.150 | 53.150 | 2.410 |
High resolution limit [Å] | 2.330 | 9.020 | 2.330 |
Rmerge | 0.071 | 0.037 | 0.180 |
Rmeas | 0.084 | 0.044 | 0.214 |
Rpim | 0.045 | 0.023 | 0.115 |
Total number of observations | 61349 | ||
Number of reflections | 18374 | ||
<I/σ(I)> | 12.4 | ||
Completeness [%] | 99.7 | 89.3 | 99.9 |
Redundancy | 3.3 | 3 | 3.3 |
CC(1/2) | 0.990 | 0.996 | 0.946 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 50 mM imidazole pH 7.0-7.5, 350 mM sodium acetate, 16-18% PEG 3350 |