5VQ9
Structure of human TRIP13, Apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-12-05 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97918 |
Spacegroup name | P 65 |
Unit cell lengths | 96.964, 96.964, 122.646 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 83.973 - 3.020 |
R-factor | 0.2009 |
Rwork | 0.199 |
R-free | 0.23830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xgu |
RMSD bond length | 0.009 |
RMSD bond angle | 1.052 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 122.650 | 3.200 |
High resolution limit [Å] | 3.020 | 3.020 |
Rmerge | 0.087 | 1.116 |
Rpim | 0.040 | 0.514 |
Number of reflections | 12908 | 2069 |
<I/σ(I)> | 19 | 1.8 |
Completeness [%] | 100.0 | 100 |
Redundancy | 5.7 | 5.7 |
CC(1/2) | 0.999 | 0.619 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 0.1 M Tris-HCl pH 8.5, 0.8 M LiCl, 4% PEG 3350, cryoprotected with 20% glycerol |