5VQ8
Crystal structure of human WT-KRAS in complex with GDP (EDTA soaked)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-04-05 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.97931 |
Spacegroup name | H 3 |
Unit cell lengths | 93.900, 93.900, 120.562 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 67.420 - 2.300 |
R-factor | 0.2201 |
Rwork | 0.217 |
R-free | 0.26600 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.016 |
RMSD bond angle | 0.942 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 67.420 | 67.420 | 2.420 |
High resolution limit [Å] | 2.300 | 7.270 | 2.300 |
Rmerge | 0.101 | 0.032 | 0.684 |
Rmeas | 0.111 | 0.046 | 0.035 |
Rpim | 0.047 | 0.019 | 0.016 |
Total number of observations | 100268 | ||
Number of reflections | 17602 | ||
<I/σ(I)> | 12.4 | ||
Completeness [%] | 99.8 | 95 | 100 |
Redundancy | 5.7 | 5.3 | 5.8 |
CC(1/2) | 0.997 | 0.998 | 0.710 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 0.2 mol/L sodium acetate, 0.1 mol/L Tris pH 8.5, 24% PEG 3,350 |