5VQ0
Crystal structure of human KRAS G12A mutant in complex with GDP (EDTA soaked)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-04-05 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.97931 |
Spacegroup name | H 3 |
Unit cell lengths | 92.766, 92.766, 118.415 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 66.480 - 2.300 |
R-factor | 0.2194 |
Rwork | 0.216 |
R-free | 0.27290 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.015 |
RMSD bond angle | 2.376 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 66.480 | 46.380 | 2.420 |
High resolution limit [Å] | 2.300 | 7.270 | 2.300 |
Rmerge | 0.046 | 0.017 | 0.150 |
Rmeas | 0.050 | 0.022 | 0.019 |
Rpim | 0.021 | 0.009 | 0.008 |
Number of reflections | 16807 | ||
<I/σ(I)> | 23.5 | ||
Completeness [%] | 99.4 | 85 | 100 |
Redundancy | 5.6 | 5.2 | 5.7 |
CC(1/2) | 0.999 | 1.000 | 0.991 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 0.2 mol/L sodium acetate, 0.1 mol/L Tris pH 8.5, 26% PEG 3,350 |