5VPY
Crystal structure of human KRAS G12A mutant in complex with GppNHp
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-04-05 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.97931 |
Spacegroup name | H 3 |
Unit cell lengths | 94.609, 94.609, 120.808 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 67.810 - 2.000 |
R-factor | 0.1902 |
Rwork | 0.188 |
R-free | 0.23260 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.585 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 67.810 | 38.800 | 2.110 |
High resolution limit [Å] | 2.000 | 6.320 | 2.000 |
Rmerge | 0.136 | 0.047 | 0.792 |
Rmeas | 0.151 | 0.071 | 0.053 |
Rpim | 0.065 | 0.030 | 0.023 |
Number of reflections | 27195 | ||
<I/σ(I)> | 7.7 | ||
Completeness [%] | 99.9 | 95.3 | 100 |
Redundancy | 5.3 | 5.1 | 5.2 |
CC(1/2) | 0.993 | 0.996 | 0.613 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 0.2 mol/L sodium acetate, 0.1 mol/L Tris pH 8.5, 24% PEG 3,350 |