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5VPU

Crystal Structure of 2,3-bisphosphoglycerate-independent phosphoglycerate mutase bound to 3-phosphoglycerate, from Acinetobacter baumannii

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyCCD
Collection date2017-04-29
DetectorRAYONIX MX-300
Wavelength(s)0.97856
Spacegroup nameP 1 21 1
Unit cell lengths45.940, 82.090, 72.410
Unit cell angles90.00, 97.64, 90.00
Refinement procedure
Resolution41.045 - 1.500
R-factor0.1355
Rwork0.135
R-free0.16400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1o98
RMSD bond length0.006
RMSD bond angle1.108
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX (1.8.4_1496)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]41.04541.0451.540
High resolution limit [Å]1.5006.7101.500
Rmerge0.0480.0340.151
Rmeas0.0520.0370.169
Total number of observations517771
Number of reflections843059866026
<I/σ(I)>22.9838.039.05
Completeness [%]99.099.495.5
Redundancy6.1426.5085.148
CC(1/2)0.9990.9990.987
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5290MCSG1 F2: 0.2 M Ammonium Acetate 0.1 M Bis-Tris: HCl, pH 6.5 25 % (w/v) PEG 3350 +3mM 3-phosphoglycerate cryo:15% Ethylene glycol PS38071 24.7mg/mL, 0.4+0.4 puck frn7-12

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PDB entries from 2024-08-14

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