5VPB
Transcription factor FosB/JunD bZIP domain in its oxidized form, type-I crystal
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-22 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.9787 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 92.825, 99.261, 49.860 |
Unit cell angles | 90.00, 109.40, 90.00 |
Refinement procedure
Resolution | 43.738 - 2.691 |
R-factor | 0.2415 |
Rwork | 0.238 |
R-free | 0.27460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vpa |
RMSD bond length | 0.002 |
RMSD bond angle | 0.419 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.740 | 43.740 | 2.750 |
High resolution limit [Å] | 2.691 | 7.320 | 2.691 |
Rmerge | 0.064 | 0.037 | 0.641 |
Rmeas | 0.074 | 0.044 | 0.748 |
Rpim | 0.038 | 0.023 | 0.384 |
Number of reflections | 11872 | ||
<I/σ(I)> | 20 | 2 | |
Completeness [%] | 99.9 | 97.7 | 100 |
Redundancy | 3.8 | 3.6 | 3.8 |
CC(1/2) | 0.997 | 0.902 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 45% (v/v) 2-methyl-2,4-pentanediol (MPD), 0.3 M NaCl and 0.1 M HEPES pH 7.5 |