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5VN6

Crystal structure of Taurine dioxygenase from Burkholderia ambifaria

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2016-02-03
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameC 1 2 1
Unit cell lengths81.180, 84.890, 95.680
Unit cell angles90.00, 110.53, 90.00
Refinement procedure
Resolution40.465 - 2.100
R-factor0.167
Rwork0.165
R-free0.20470
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3pvj
RMSD bond length0.007
RMSD bond angle0.888
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX ((dev_2747))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.46540.4652.150
High resolution limit [Å]2.1009.3902.100
Rmerge0.0480.0190.569
Rmeas0.0550.0220.652
Number of reflections354884072598
<I/σ(I)>19.452.512.82
Completeness [%]99.795.199.9
Redundancy4.213.64.252
CC(1/2)0.9990.9990.836
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.65290RigakuReagents JCSG+ screen, D6: 18% PEG 8000, 100mM Tris base/HCl pH 7.65, 200mM MgCl2: BuamA.00024.a.B1.PS02503 at 20.9mg/ml : cryo: 20% EG: tray 267365D6, puck PRV7-6

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PDB entries from 2024-07-17

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