5VN6
Crystal structure of Taurine dioxygenase from Burkholderia ambifaria
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-02-03 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 81.180, 84.890, 95.680 |
Unit cell angles | 90.00, 110.53, 90.00 |
Refinement procedure
Resolution | 40.465 - 2.100 |
R-factor | 0.167 |
Rwork | 0.165 |
R-free | 0.20470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3pvj |
RMSD bond length | 0.007 |
RMSD bond angle | 0.888 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX ((dev_2747)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.465 | 40.465 | 2.150 |
High resolution limit [Å] | 2.100 | 9.390 | 2.100 |
Rmerge | 0.048 | 0.019 | 0.569 |
Rmeas | 0.055 | 0.022 | 0.652 |
Number of reflections | 35488 | 407 | 2598 |
<I/σ(I)> | 19.4 | 52.51 | 2.82 |
Completeness [%] | 99.7 | 95.1 | 99.9 |
Redundancy | 4.21 | 3.6 | 4.252 |
CC(1/2) | 0.999 | 0.999 | 0.836 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.65 | 290 | RigakuReagents JCSG+ screen, D6: 18% PEG 8000, 100mM Tris base/HCl pH 7.65, 200mM MgCl2: BuamA.00024.a.B1.PS02503 at 20.9mg/ml : cryo: 20% EG: tray 267365D6, puck PRV7-6 |