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5VJ9

Guanidine-II riboswitch P2 hairpin dimer from Pseudomonas aeruginosa

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2017-04-07
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.9193
Spacegroup nameP 21 21 21
Unit cell lengths50.252, 60.664, 72.308
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution40.000 - 1.570
R-factor0.1943
Rwork0.192
R-free0.23440
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.013
RMSD bond angle1.845
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.00040.0001.600
High resolution limit [Å]1.5704.2601.570
Rmerge0.0520.0311.016
Rmeas0.0550.0331.097
Rpim0.0160.0100.402
Total number of observations361260
Number of reflections31438
<I/σ(I)>7.6
Completeness [%]99.899.598.8
Redundancy11.511.26.9
CC(1/2)0.9990.565
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH5296.1540% MPD, 50 mM Na-acetate, pH 5.0, 12 mM NaCl, 80 mM KCl, and 12 mM spermine

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PDB entries from 2024-07-10

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