5VJ9
Guanidine-II riboswitch P2 hairpin dimer from Pseudomonas aeruginosa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-07 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9193 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.252, 60.664, 72.308 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.000 - 1.570 |
R-factor | 0.1943 |
Rwork | 0.192 |
R-free | 0.23440 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.845 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.600 |
High resolution limit [Å] | 1.570 | 4.260 | 1.570 |
Rmerge | 0.052 | 0.031 | 1.016 |
Rmeas | 0.055 | 0.033 | 1.097 |
Rpim | 0.016 | 0.010 | 0.402 |
Total number of observations | 361260 | ||
Number of reflections | 31438 | ||
<I/σ(I)> | 7.6 | ||
Completeness [%] | 99.8 | 99.5 | 98.8 |
Redundancy | 11.5 | 11.2 | 6.9 |
CC(1/2) | 0.999 | 0.565 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 5 | 296.15 | 40% MPD, 50 mM Na-acetate, pH 5.0, 12 mM NaCl, 80 mM KCl, and 12 mM spermine |