5VD4
CRYSTAL STRUCTURE OF HUMAN WEE1 KINASE DOMAIN IN COMPLEX WITH RAC-IV-016, a MK1775 analougue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 93 |
Detector technology | CCD |
Collection date | 2016-06-10 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.310, 43.780, 64.860 |
Unit cell angles | 90.00, 103.04, 90.00 |
Refinement procedure
Resolution | 63.187 - 2.020 |
Rwork | 0.203 |
R-free | 0.24530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5v5y |
RMSD bond length | 0.007 |
RMSD bond angle | 0.928 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.187 | 63.187 | 2.070 |
High resolution limit [Å] | 2.020 | 9.030 | 2.020 |
Rmerge | 0.065 | 0.032 | 0.300 |
Rmeas | 0.076 | 0.038 | 0.354 |
Number of reflections | 18106 | 216 | 1311 |
<I/σ(I)> | 12.23 | 22.57 | 4.86 |
Completeness [%] | 99.0 | 93.1 | 99.6 |
Redundancy | 3.554 | 3.264 | 3.532 |
CC(1/2) | 0.997 | 0.998 | 0.862 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.9 | 291 | 5.0 MG/ML WEE1, 25 mM Na/K phosphate, 1 mM DTT, 0.05 M ammonium sulfate, 0.05 M Bis-tris (pH 5.5), 7.5 % PEG 3350, 1 mM RAC-IV-016 |