5VD1
CRYSTAL STRUCTURE OF HUMAN MYT1 KINASE DOMAIN IN COMPLEX WITH PHA-848125
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-10-19 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.550, 55.390, 113.810 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.008 - 1.700 |
Rwork | 0.146 |
R-free | 0.19440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vcv |
RMSD bond length | 0.012 |
RMSD bond angle | 1.405 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 34.008 | 34.008 | 1.740 |
High resolution limit [Å] | 1.700 | 7.600 | 1.700 |
Rmerge | 0.067 | 0.051 | 0.307 |
Rmeas | 0.075 | 0.058 | 0.347 |
Number of reflections | 32890 | 412 | 2369 |
<I/σ(I)> | 14.02 | 23.6 | 4.28 |
Completeness [%] | 98.7 | 93.6 | 97.7 |
Redundancy | 4.48 | 3.862 | 4.56 |
CC(1/2) | 0.997 | 0.996 | 0.910 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 14 MG/ML MYT1, 50 mM HEPES PH 7.5, 0.5 mM DTT, 0.05 M POTASSIUM CHLORIDE, 17.5 (V/V) % pentaerythritol propoxylate (5/4 PO/OH), 1.5 mM PHA-848125 |