Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5VCF

RNA hairpin structure containing tetraloop/receptor motif, complexed with 2-MeImpG analogue

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.2
Synchrotron siteALS
Beamline8.2.2
Temperature [K]99
Detector technologyCCD
Collection date2016-09-16
DetectorADSC QUANTUM 315
Wavelength(s)1
Spacegroup nameH 3
Unit cell lengths71.073, 71.073, 71.274
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution46.580 - 2.800
R-factor0.16517
Rwork0.163
R-free0.21335
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4fnj
RMSD bond length0.009
RMSD bond angle1.890
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.900
High resolution limit [Å]2.8002.800
Rmerge0.0720.512
Number of reflections3296316
<I/σ(I)>0.981.53
Completeness [%]99.7100
Redundancy3.33.3
CC(1/2)0.886
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP729550 mM MgCl2, 200 mM Lithium sulfate monohydrate, 100 mM BIS-TRIS pH 7.0, 25% w/v Polyethylene glycol 3,350

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon