5VBD
Crystal structure of a putative UBL domain of USP9X
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-28 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.97914 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 46.723, 125.294, 29.546 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.500 |
R-factor | 0.2276 |
Rwork | 0.227 |
R-free | 0.23600 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.426 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | Arcimboldo |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.530 |
High resolution limit [Å] | 1.500 | 4.070 | 1.500 |
Rmerge | 0.058 | 0.046 | 0.857 |
Rmeas | 0.061 | 0.048 | 0.902 |
Rpim | 0.018 | 0.015 | 0.278 |
Total number of observations | 166545 | ||
Number of reflections | 14247 | ||
<I/σ(I)> | 7.5 | ||
Completeness [%] | 99.8 | 99.2 | 99.9 |
Redundancy | 11.7 | 10.9 | 10.1 |
CC(1/2) | 0.996 | 0.891 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | 20% PEG 8000, 0.2 M NaCl, 0.1 M HEPES pH7.5, 5% MPD |