5VAZ
Crystal structure of a DNA primase domain from Pseudomonas aeruginosa
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-03-12 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 142.300, 142.300, 106.460 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.866 - 2.400 |
R-factor | 0.1879 |
Rwork | 0.187 |
R-free | 0.21400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dd9 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.883 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.866 | 48.866 | 2.460 |
High resolution limit [Å] | 2.400 | 10.730 | 2.400 |
Rmerge | 0.060 | 0.028 | 0.534 |
Rmeas | 0.065 | 0.031 | 0.573 |
Number of reflections | 48947 | 602 | 3607 |
<I/σ(I)> | 21.11 | 45.96 | 3.68 |
Completeness [%] | 100.0 | 97.4 | 100 |
Redundancy | 7.486 | 6.281 | 7.6 |
CC(1/2) | 0.999 | 0.999 | 0.901 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 289 | PsaeA.00153.a.B7.PS38108 at 18.8 mg/mL against Top96 screen condition A4: 0.1 M Tris pH 8.5, 2 M ammonium sulfate, cryo-protected with 20% EG, crystal tracking ID 28610a4 |