5V8Y
Mutant Structures of Streptococcus Agalactiae GBS Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-13 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.5418 |
Spacegroup name | P 4 21 2 |
Unit cell lengths | 147.081, 147.081, 72.283 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.667 - 1.950 |
R-factor | 0.1937 |
Rwork | 0.192 |
R-free | 0.21930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jyf |
RMSD bond length | 0.004 |
RMSD bond angle | 0.649 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX (1.11.1-2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.980 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.099 | 0.822 |
Rmeas | 0.108 | 0.964 |
Rpim | 0.040 | 0.492 |
Number of reflections | 52755 | |
<I/σ(I)> | 11.6 | |
Completeness [%] | 90.6 | 76.3 |
Redundancy | 5.9 | 3.5 |
CC(1/2) | 0.655 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 295 | 20% PEG 3350, 0.2M MgCl2, 0.1 M Mes pH 6.0 |