Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5V8Y

Mutant Structures of Streptococcus Agalactiae GBS Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2017-02-13
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.5418
Spacegroup nameP 4 21 2
Unit cell lengths147.081, 147.081, 72.283
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.667 - 1.950
R-factor0.1937
Rwork0.192
R-free0.21930
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5jyf
RMSD bond length0.004
RMSD bond angle0.649
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER (2.7.17)
Refinement softwarePHENIX (1.11.1-2575)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.980
High resolution limit [Å]1.9501.950
Rmerge0.0990.822
Rmeas0.1080.964
Rpim0.0400.492
Number of reflections52755
<I/σ(I)>11.6
Completeness [%]90.676.3
Redundancy5.93.5
CC(1/2)0.655
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP629520% PEG 3350, 0.2M MgCl2, 0.1 M Mes pH 6.0

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon