5V73
Crystal structure of N110A mutant of human macrophage migration inhibitory factor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-01-25 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.918, 68.253, 86.898 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.140 - 1.680 |
R-factor | 0.1528 |
Rwork | 0.152 |
R-free | 0.17530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3djh |
RMSD bond length | 0.022 |
RMSD bond angle | 2.005 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.710 |
High resolution limit [Å] | 1.680 | 4.560 | 1.680 |
Rmerge | 0.060 | 0.051 | 0.303 |
Rmeas | 0.067 | 0.056 | 0.371 |
Rpim | 0.029 | 0.021 | 0.210 |
Total number of observations | 173933 | ||
Number of reflections | 45605 | 2149 | |
<I/σ(I)> | 11 | ||
Completeness [%] | 97.5 | 99.6 | 92.7 |
Redundancy | 3.8 | 6.1 | 2.6 |
CC(1/2) | 0.997 | 0.707 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 2 M ammonium sulfate, 3 % 2-propanol, 0.1 M Tris-HCl, pH 7.0 - 8.0 |