5V58
Crystal structure of human prolyl-tRNA synthetase in complex with Aze-SA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2012-05-05 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 86.766, 86.766, 108.773 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 35.540 - 2.590 |
R-factor | 0.2291 |
Rwork | 0.227 |
R-free | 0.27200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4hvc |
RMSD bond length | 0.004 |
RMSD bond angle | 1.045 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.630 |
High resolution limit [Å] | 2.590 | 7.020 | 2.590 |
Rmerge | 0.057 | 0.053 | 0.337 |
Number of reflections | 14793 | ||
<I/σ(I)> | 19 | ||
Completeness [%] | 96.9 | 98.4 | 86.5 |
Redundancy | 10.2 | 9.4 | 8.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 293 | 9% PEG3350, 250 mM sodium nitrate, 100 mM 3-(1-pyridino)-1-propane sulfonate |