5V33
R. sphaeroides photosythetic reaction center mutant - Residue L223, Ser to Trp - Room Temperature Structure Solved on X-ray Transparent Microfluidic Chip
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 298 |
Detector technology | PIXEL |
Collection date | 2016-08-04 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 102.332, 102.332, 240.333 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.076 - 3.487 |
R-factor | 0.2246 |
Rwork | 0.221 |
R-free | 0.26160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tqq |
RMSD bond length | 0.003 |
RMSD bond angle | 0.702 |
Data reduction software | HKL-2000 (v704x) |
Data scaling software | HKL-2000 (v704x) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.560 |
High resolution limit [Å] | 3.500 | 9.480 | 3.500 |
Rmerge | 0.290 | 0.148 | 0.720 |
Rmeas | 0.322 | 0.172 | 0.793 |
Rpim | 0.132 | 0.081 | 0.317 |
Total number of observations | 84779 | ||
Number of reflections | 15671 | ||
<I/σ(I)> | 2.9 | ||
Completeness [%] | 92.0 | 88.5 | 94.6 |
Redundancy | 5.4 | 4.8 | 5.4 |
CC(1/2) | 0.960 | 0.618 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROFLUIDIC | 7.8 | 293 | Crystals were grown in microfluidic wells. LCPs were formulated by overlaying ~40 nl of protein solution over ~10 nl of solid monoolein. LCPs formed by diffusion during a 4 hour incubation. Precipitants were then introduced to the crystallization well, and crystals were observed after 3 days. Crystals were grown at 15-20 mg/mL protein concentration (in 10 mM Tris pH 7.8, 280 mM NaCl, 0.05% LDAO) with a precipitant of 1 M HEPES pH 7.5, 1.15 M (NH4)2(SO4) and 14-15 %w/v Jeffamine M-600. |