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5V1T

Crystal structure of Streptococcus suis SuiB bound to precursor peptide SuiA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-B
Synchrotron siteAPS
Beamline23-ID-B
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2015-07-20
DetectorMAR scanner 300 mm plate
Wavelength(s)1.0332
Spacegroup nameP 21 21 2
Unit cell lengths69.370, 115.040, 54.330
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.235 - 2.100
R-factor0.1926
Rwork0.189
R-free0.22270
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5v1q
RMSD bond length0.006
RMSD bond angle0.942
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.10.1_2155: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.2402.160
High resolution limit [Å]2.1002.100
Rmerge0.1230.799
Number of reflections25903
<I/σ(I)>9.31.9
Completeness [%]99.397.1
Redundancy3.43.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP285A solution containing 23 mg/mL of His6-tagged SuiB in storage buffer [100 mM HEPES, pH 7.5, 300 mM KCl, 5 mM DTT, 10% (v/v) glycerol] was mixed with a stock solution of SuiA in storage buffer lacking DTT, yielding a final SuiA concentration of 1.9 mM. The resultant solution was incubated for 10 min after which it was combined 1:1 with precipitant solution to form a 4 uL drop. Crystals appeared within 2 days and were fully grown within a week. The precipitant solution was generated by combining 100 mM Bis-Tris, pH 6.0, 200 mM Li2SO4, 27% (w/v) PEG 3350 with 210 mM SAM in water to yield a final SAM concentration of 10.5 mM.

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