5UZ6
RNA hairpin structure containing 2-MeImp-oligo analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 99 |
Detector technology | CCD |
Collection date | 2016-10-28 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 106.695, 63.066, 65.917 |
Unit cell angles | 90.00, 122.22, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.100 |
R-factor | 0.223 |
Rwork | 0.221 |
R-free | 0.26700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ux3 |
RMSD bond length | 0.014 |
RMSD bond angle | 2.452 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (v3.0) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.180 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.052 | 0.323 |
Number of reflections | 20855 | 1912 |
<I/σ(I)> | 15.5 | 1.8 |
Completeness [%] | 96.9 | 89 |
Redundancy | 2.7 | 2 |
CC(1/2) | 0.825 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | 50 mM MgCl2, 3 M ammonia sulfate, 100 mM HEPES 7.5 |