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5UGA

Crystal structure of the EGFR kinase domain (L858R, T790M, V948R) in complex with 4-(4-{[2-{[(3S)-1-acetylpyrrolidin-3-yl]amino}-9-(propan-2-yl)-9H-purin-6-yl]amino}phenyl)-1-methylpiperazin-1-ium

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]98
Detector technologyPIXEL
Collection date2013-04-03
DetectorDECTRIS PILATUS 6M
Wavelength(s)1
Spacegroup nameP 21 21 21
Unit cell lengths40.904, 69.595, 110.218
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution58.850 - 1.820
R-factor0.235
Rwork0.233
R-free0.26400
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle0.800
Data scaling softwareSCALA
Phasing softwareCNX
Refinement softwareCNX (2005)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]58.8501.920
High resolution limit [Å]1.8201.820
Rmerge0.462
Number of reflections28868
<I/σ(I)>11.63.3
Completeness [%]99.999.9
Redundancy5.95.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP296Salt: 0.2 M Ammonium sulfate Precipitant: 20.0 %w/v PEG 8000 Buffer: 0.1 M HEPES (pH 7.50) Precipitant: 13.6 %v/v iso-propanol

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PDB entries from 2024-11-13

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