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5UG8

Crystal structure of the EGFR kinase domain (L858R, T790M, V948R) in complex with a covalent inhibitor N-[(3R,4R)-4-fluoro-1-{6-[(1-methyl-1H-pyrazol-4-yl)amino]-9-(propan-2-yl)-9H-purin-2-yl}pyrrolidin-3-yl]propanamide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]98
Detector technologyPIXEL
Collection date2013-06-03
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1
Spacegroup nameP 21 21 21
Unit cell lengths34.948, 69.836, 113.252
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution59.440 - 1.460
R-factor0.193
Rwork0.192
R-free0.20700
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.004
RMSD bond angle0.800
Data scaling softwareSCALA
Phasing softwareCNX
Refinement softwareCNX (2005)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]59.4401.540
High resolution limit [Å]1.4601.460
Rmerge0.486
Number of reflections49189
<I/σ(I)>16.23.2
Completeness [%]99.9100
Redundancy6.46.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP286Salt: 0.2 M Ammonium sulfate Precipitant: 11.4 %w/v PEG 8000 Buffer: 0.1 M HEPES (pH 7.50) Precipitant: 10.0 %v/v iso-propanol

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PDB entries from 2024-07-10

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