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5UFM

Crystal structure of Burkholderia thailandensis 1,6-didemethyltoxoflavin-N1-methyltransferase with bound 1,6-didemethyltoxoflavin and S-adenosylhomocysteine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE A1
Synchrotron siteCHESS
BeamlineA1
Temperature [K]100
Detector technologyCCD
Collection date2013-02-26
DetectorADSC QUANTUM 210
Wavelength(s)0.97590
Spacegroup nameP 61
Unit cell lengths112.698, 112.698, 78.367
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution23.000 - 1.770
R-factor0.1537
Rwork0.152
R-free0.18400
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.006
RMSD bond angle0.881
Refinement softwarePHENIX ((1.11.1_2575: 000))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]23.0001.830
High resolution limit [Å]1.7701.770
Rmerge0.0580.380
Number of reflections54274
<I/σ(I)>12.62.6
Completeness [%]98.185.9
Redundancy3.43
CC(1/2)0.830
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.4295100 mM HEPES, pH 6.0 - 7.0, 1.0 - 2.0 M ammonium sulfate, and 1 mM S-adenosylhomocysteine. 1,6-didemethyltoxoflavin (25 mM), S-adenosylhomocysteine (6 mM), and dithiothreitol (5 mM) were added during crystal soak experiment.

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PDB entries from 2024-11-06

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