5UFM
Crystal structure of Burkholderia thailandensis 1,6-didemethyltoxoflavin-N1-methyltransferase with bound 1,6-didemethyltoxoflavin and S-adenosylhomocysteine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE A1 |
Synchrotron site | CHESS |
Beamline | A1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-02-26 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.97590 |
Spacegroup name | P 61 |
Unit cell lengths | 112.698, 112.698, 78.367 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 23.000 - 1.770 |
R-factor | 0.1537 |
Rwork | 0.152 |
R-free | 0.18400 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.006 |
RMSD bond angle | 0.881 |
Refinement software | PHENIX ((1.11.1_2575: 000)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 23.000 | 1.830 |
High resolution limit [Å] | 1.770 | 1.770 |
Rmerge | 0.058 | 0.380 |
Number of reflections | 54274 | |
<I/σ(I)> | 12.6 | 2.6 |
Completeness [%] | 98.1 | 85.9 |
Redundancy | 3.4 | 3 |
CC(1/2) | 0.830 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.4 | 295 | 100 mM HEPES, pH 6.0 - 7.0, 1.0 - 2.0 M ammonium sulfate, and 1 mM S-adenosylhomocysteine. 1,6-didemethyltoxoflavin (25 mM), S-adenosylhomocysteine (6 mM), and dithiothreitol (5 mM) were added during crystal soak experiment. |